Table 4 Results for mapping 5 million real reads of length 250 bps to the hg19 (ED 7)
From: Fast and efficient short read mapping based on a succinct hash index
Mappers | 1-thread time | 8-thread time | 16-thread time | 32-thread time | Mapped reads |
|---|---|---|---|---|---|
(s) | (s) | (s) | (s) | (#) | |
FEM-vl | 1085 | 150 | 78 | 56 | 4014477 |
FEM-g | 893 | 126 | 64 | 48 | 4014476 |
Hobbes3 | 8442 | 1160 | 594 | 529 | 4014477 |
Bitmapper | 1089 | 149 | 134 | 135 | 4014477 |
Bitmapper2 | 4957 | 680 | 353 | 310 | 4014474 |
Masai | 11363 | - | - | - | 4014476 |