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Table 1 Pipeline test of Pre-SCNAClonal on HCC1954

From: Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring

Sample name n5t95 n20t80 n40t60 n60t40 n80t20 n95t5
Pre-SCNAClonal–MixClone (%) 0.874 0.722 0.523 0.374 0.200 0.054
MixClone (%) 0.645 0.589 0.471 0.199 0.144 0.188
Pre-SCNAClonal–THetA (%) 0.572 0.461 0.281 0.163 - -
THetA (%) 0.463 0.374 0.269 0.148 - -
  1. Here ‘n5t95’, ‘n20t80’, ‘n40t60’, ‘n60t40’ and ‘n95t5’ respectively denote the tumor sample ‘HCC1954.mix1.n5t95’, ‘HCC1954.mix1.n20t80’, ‘HCC1954.mix1.n40t60’, ‘HCC1954.mix1.n60t40’, ‘HCC1954.mix1.n80t20’ and ‘HCC1954.mix1.n95t5’. Each of these sample contains one tumor subclone. Numbers in the table are the tumor subclonal frequencies predicted by the pipeline