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Fig. 6 | BMC Bioinformatics

Fig. 6

From: VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

Fig. 6

a Summary boxplot depicting the population levels of various immune cell classes seen across normal, luminal and basal breast cancers in TCGA. b A Q-Q plot that depicts the gene expression of immune cells after batch correction within the TIMER module, and a bar graph per sample that depicts the proportion of immune cell signature in a particular sample. c Plots depicting TCR clonal diversity reported as clonotypes per thousand reads (CPK) in normal, luminal and basal breast cancers

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BMC Bioinformatics

ISSN: 1471-2105

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