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Table 3 List of all bacterial metabolic reactions identified in high methane yield animals

From: STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

Abbreviation Subsystem Official Name
NADH16pp Oxidative Phosphorylation NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)
PROt2rpp Transport L-proline reversible transport via proton symport (periplasm)
PROt4pp Transport Na+/Proline-L symporter (periplasm)
GLCP2 Glycolysis/Gluconeogenesis glycogen phosphorylase
GLCS1 Glycolysis/Gluconeogenesis glycogen synthase (ADPGlc)
GLGC Glycolysis/Gluconeogenesis glucose-1-phosphate adenylyltransferase
THRt2rpp Transport L-threonine reversible transport via proton symport (periplasm)
THRt4pp Transport L-threonine via sodium symport (periplasm)
INSt2pp Transport inosine transport in via proton symport (periplasm)
INSt2rpp Transport inosine transport in via proton symport reversible (periplasm)
PPCSCT Alternate Carbon Metabolism Propanoyl-CoA: succinate CoA-transferase
SUCOAS Citric Acid Cycle succinyl-CoA synthetase (ADP-forming)
TALA Pentose Phosphate Pathway transaldolase
ACCOAL Alternate Carbon Metabolism acetate-CoA ligase (ADP-forming)
GLUt4pp Transport Na+/glutamate symport (periplasm)
PPAKr Alternate Carbon Metabolism Propionate kinase
PTA2 Alternate Carbon Metabolism Phosphate acetyltransferase
THFAT Folate Metabolism Tetrahydrofolate aminomethyltransferase
FOMETRi Folate Metabolism Aminomethyltransferase
ADK3 Nucleotide Salvage Pathway adentylate kinase (GTP)
FBA3 Pentose Phosphate Pathway 7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
PFK_3 Pentose Phosphate Pathway phosphofructokinase (s7p)
URAt2pp Transport uracil transport in via proton symport (periplasm)
URAt2rpp Transport uracil transport in via proton symport reversible (periplasm)
GLYt2pp Transport glycine transport in via proton symport (periplasm)
GLCP Glycolysis/Gluconeogenesis glycogen phosphorylase
NDPK1 Nucleotide Salvage Pathway nucleoside-diphosphate kinase (ATP:GDP)
CA2t3pp Inorganic Ion Transport and Metabolism calcium (Ca + 2) transport out via proton antiport (periplasm)
CAt6pp Inorganic Ion Transport and Metabolism calcium / sodium antiporter (1:1)
PPKr Oxidative Phosphorylation polyphosphate kinase
URIt2pp Transport uridine transport in via proton symport (periplasm)
URIt2rpp Transport uridine transport in via proton symport reversible (periplasm)
NADH18pp Oxidative Phosphorylation NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)
FRD3 Citric Acid Cycle fumarate reductase
ALAt2pp Transport L-alanine transport in via proton symport (periplasm)
ALAt2rpp Transport L-alanine reversible transport via proton symport (periplasm)
GLYt2rpp Transport glycine reversible transport via proton symport (periplasm)