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Fig. 1 | BMC Bioinformatics

Fig. 1

From: SAMSA2: a standalone metatranscriptome analysis pipeline

Fig. 1

The SAMSA2 analysis pipeline. Starting sequence reads are merged, cleaned, and filtered to remove ribosomal RNA (rRNA) sequences. At the annotation step, DIAMOND can be used to incorporate any custom database as an annotation reference. Results are condensed and analyzed using custom Python scripting, and saved as standard data tables that can be imported into R to generate figures or for statistical comparison

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