Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database

Table 5 PLI predictions of CASP10/11 targets proteins†

Target	Interactions	Correct Prediction	Recall
T0652	60	36	60%
T0657	24	23	95.80%
T0675	30	28	93.30%
T0686	18	17	94.40%
T0696	18	15	83.30%
T0697	104	72	69.20%
T0706	24	21	87.50%
T0720	78	58	74.40%
T0721	60	50	83.30%
T0737	72	63	87.50%
T0744	42	37	88.10%
T0762	42	35	83.30%
T0764	60	52	86.70%
T0770	18	14	77.80%
T0784	18	18	100%
T0854	24	20	83.30%

† Target 762 to 854 were taken from CASP11 whose protein-ligand interactions were well characterized in the crystal structures

ISSN: 1471-2105