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Table 3 Time consumption for each steps in the NextSV pipeline for 10X PacBio data set

From: NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data

SV caller Aligner CPU (number of threads) Alignment time (hour) SV calling time (hour) Total Time (hour)
PBHoney BLASR 12 79.6 0.27 (Tails)
0.96 (Spots)
80.8
Sniffles BWA-MEM 12 27.0 1.1 28.1
Sniffles NGMLR 12 11.2 1.3 12.5