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Table 3 Time consumption for each steps in the NextSV pipeline for 10X PacBio data set

From: NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data

SV caller Aligner CPU (number of threads) Alignment time (hour) SV calling time (hour) Total Time (hour)
PBHoney BLASR 12 79.6 0.27 (Tails)
0.96 (Spots)
Sniffles BWA-MEM 12 27.0 1.1 28.1
Sniffles NGMLR 12 11.2 1.3 12.5