Table 3 Time consumption for each steps in the NextSV pipeline for 10X PacBio data set
From: NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
SV caller | Aligner | CPU (number of threads) | Alignment time (hour) | SV calling time (hour) | Total Time (hour) |
|---|---|---|---|---|---|
PBHoney | BLASR | 12 | 79.6 | 0.27 (Tails) 0.96 (Spots) | 80.8 |
Sniffles | BWA-MEM | 12 | 27.0 | 1.1 | 28.1 |
Sniffles | NGMLR | 12 | 11.2 | 1.3 | 12.5 |