Skip to main content

Table 3 Average execution times (seconds) of GDOpt, both SimEli implementations and CH3 for 10 independent samples from each dataset. Three configurations are considered for CH3: (a) maximize E-NE; (b) minimize A-NE; and (c) maximize HE

From: Core Hunter 3: flexible core subset selection

  Rice Coconut Maize Pea
GDOpt 14.9 7.1 91.2 350.1
SimEli-A-RA 7.6 7.5 11.5 514.7
SimEli-HE - 15.9 78.0 502.3
CH3 E-NE 45.8 37.5 74.3 154.1
CH3 A-NE 74.6 55.7 133.1 86.7
CH3 HE - 16.6 40.2 62.8
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us