Table 1 Rank of median (over the top 100 nuclear profiles) explained variances for PC1+PC2 and PC2 of the GAM-based HSA 3D reconstruction among an additional 1000 (within nuclear profile) permutations of loci [1 is least, 1001 is most explained variance]
From: Improved accuracy assessment for 3D genome reconstructions
| Â | PC1 + PC2 | PC2 |
|---|---|---|
Chrom 1 | 1 | 1000 |
Chrom 2 | 1001 | 1 |
Chrom 3 | 823 | 1001 |
Chrom 4 | 95 | 424 |
Chrom 5 | 991 | 1001 |
Chrom 6 | 1001 | 99 |
Chrom 7 | 1 | 1001 |
Chrom 8 | 1001 | 787 |
Chrom 9 | 1 | 220 |
Chrom 10 | 1001 | 1 |
Chrom 11 | 1 | 1001 |
Chrom 12 | 35 | 1001 |
Chrom 13 | 919 | 1 |
Chrom 14 | 11 | 395 |
Chrom 15 | 832 | 977 |
Chrom 16 | 859 | 1 |
Chrom 17 | 1001 | 116 |
Chrom 18 | 388 | 1 |
Chrom 19 | 717 | 95 |