Table 2 Median explained variance for first plus second principal components and second principal components of GAM-based HSA 3D reconstruction along with corresponding medians (and associated median absolute deviation (MAD)) based on 1000 (within-profile) loci permutations

Chrom 1

96.80

96.97

0.03

12.83

12.34

0.15

Chrom 2

89.11

88.30

0.15

33.23

34.26

0.26

Chrom 3

95.39

95.29

0.10

22.50

20.61

0.16

Chrom 4

93.85

93.97

0.10

23.60

23.65

0.25

Chrom 5

95.06

94.90

0.07

17.84

17.20

0.16

Chrom 6

94.70

94.52

0.06

18.25

17.66

0.24

Chrom 7

98.47

98.58

0.03

10.19

8.99

0.15

Chrom 8

81.08

79.25

0.18

30.79

30.48

0.40

Chrom 9

97.74

98.10

0.04

26.22

26.42

0.24

Chrom 10

88.96

87.82

0.16

34.84

36.46

0.21

Chrom 11

98.51

98.69

0.01

4.79

4.41

0.08

Chrom 12

94.06

94.26

0.12

26.50

25.03

0.21

Chrom 13

96.15

96.06

0.06

15.44

15.99

0.19

Chrom 14

99.23

99.26

0.02

3.47

3.48

0.05

Chrom 15

92.37

92.24

0.13

19.12

18.71

0.19

Chrom 16

98.07

98.04

0.03

32.92

33.27

0.03

Chrom 17

79.53

77.84

0.39

31.64

31.91

0.24

Chrom 18

93.60

93.63

0.13

38.07

38.82

0.18

Chrom 19

96.29

96.25

0.07

24.78

24.35

0.25