Fig. 5From: Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sitesThe Y. pestis samples were correctly identified using the target sites identified by VaST. The placement and resolution of the sample strains on a neighbor joining tree produced using the full SNP matrix (11,249 SNPs). The group of strains indicated for each sample represent the strains that were most similar to the sample strain at each of the targets analyzed in the truncated panel. The branch lengths indicate the number of SNP differencesBack to article page