Table 6 Number of SNP pair (a,b) identified on each type of locus pair for each method
From: Performance of epistasis detection methods in semi-simulated GWAS
| Â | Â | fastepi | GBOOST | IndOR | DSS | SHEsisEpi |
|---|---|---|---|---|---|---|
Locus type a | Locus type b | Â | Â | Â | Â | Â |
RNA, long non-coding | RNA, long non-coding | 0 | 0 | 0 | 2 | 0 |
| Â | RNA, micro | 0 | 1 | 0 | 0 | 0 |
| Â | gene with protein product | 0 | 2 | 6 | 0 | 0 |
RNA, micro | RNA, micro | 0 | 0 | 0 | 1 | 0 |
| Â | gene with protein product | 0 | 0 | 0 | 2 | 0 |
| Â | intergenic | 0 | 4 | 4 | 2 | 0 |
gene with protein product | RNA, long non-coding | 0 | 0 | 14 | 2 | 0 |
| Â | RNA, micro | 0 | 0 | 1 | 1 | 0 |
| Â | gene with protein product | 2 | 22 | 148 | 17 | 0 |
| Â | intergenic | 0 | 23 | 104 | 6 | 0 |
| Â | pseudogene | 0 | 1 | 1 | 0 | 0 |
intergenic | RNA, long non-coding | 0 | 5 | 4 | 0 | 0 |
| Â | RNA, micro | 0 | 3 | 2 | 0 | 0 |
| Â | gene with protein product | 2 | 69 | 74 | 10 | 0 |
| Â | intergenic | 5 | 105 | 89 | 68 | 0 |
pseudogene | gene with protein product | 0 | 1 | 0 | 0 | 0 |
| Â | pseudogene | 0 | 1 | 0 | 0 | 0 |