Skip to main content

Table 8 Results of spd qPMS algorithms on the second group of simulated datasets

From: SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets

q

T s

qPMS9

TravStrR

T D

T D

Speedup

T D

T D

Speedup

0.2

13.0 s

N

1.3 s

> 12,084

N

0.1 s

> 13,191

0.3

13.2 s

N

1.5 s

> 11,755

N

0.1 s

> 12,992

0.4

13.0 s

N

1.7 s

> 11,755

41.8 h

0.1 s

11,490

0.5

13.0 s

N

1.7 s

> 11,755

24.3 h

0.1 s

6671

0.6

13.0 s

24.2 h

1.7 s

5919

11.2 h

0.1 s

3088

0.7

14.0 s

7.2 h

1.7 s

1651

3.1 h

0.1 s

785

0.8

14.0 s

1.5 h

1.7 s

338

1.5 h

0.1 s

377

0.9

14.0 s

9.2 m

1.7 s

35

4.1 m

0.1 s

17

  1. s seconds, m minutes, h hours, N no result because the running time exceeds 48 h; T s : running time of SamSelect; T D and T D ’: running time of a qPMS algorithm on the original dataset D and the sample sequence sets D’, respectively; speedup: T D / T s  + T D