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Table 13 QAN50 results of the tools on datasets of NA12878

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chrom. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
    cov. 15x cov. 20x     
1 91098 - 91668 91677 89249 - - 84863
2 210603 - 210098 211732 211732 - - 177388
3 229835 - 227732 229835 229655 - - 170494
4 90639 - 91034 90639 89868 - - 84861
5 99011 - 99012 99567 98900 - - 91745
6 94780 - 94200 94780 93894 - - 85483
7 156573 - 155773 155773 155209 - - 135095
8 90928 - 91069 90836 90661 - - 84076
9 85172 - 85655 85469 85655 82917 - 80957
10 123171 - 123171 123224 122317 114172 - 112861
11 84153 - 84108 84108 84237 81526 - 79057
12 224308 - 224308 228356 224308 190161 - 174540
13 229318 - 228310 228310 227286 178173 - 175124
14 243192 - 243192 227040 220294 186476 - 181826
15 180874 153527 173950 176529 176529 147339 - 138185
16 193611 160049 193611 190884 189342 158848 - 152960
17 162690 151262 163789 163789 162328 140216 - 133887
18 93705 - 94210 93705 94210 87076 - 83383
19 62662 - 62662 62568 62233 59716 - 58694
20 165921 163062 165921 176807 165921 140498 - 140034
21 222171 - 222769 221786 222171 149165 - 146675
22 82618 73223 85112 82618 85112 72117 - 70718
  1. Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (lowest value) for each dataset is boldfaced