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Table 14 Time in seconds on datasets of NA12878

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chrom. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
    cov. 15x cov. 20x     
1 20183 - 3300 41626 6301 - - 980
2 21913 - 3686 46937 6758 - - 1075
3 19325 - 2994 38040 5536 - - 776
4 21744 - 3031 40083 5998 - - 862
5 18416 - 2943 36674 5169 - - 790
6 17792 - 2658 35189 5640 - - 759
7 14321 - 2409 32550 4429 - - 744
8 15930 - 2421 29902 4578 - - 669
9 11307 - 1886 23586 3369 86913 - 635
10 13943 - 2244 27638 3914 86941 - 670
11 13291 - 1983 25419 3916 86833 - 567
12 12684 - 1916 25865 4054 86814 - 554
13 11100 - 1474 20288 2952 86686 - 406
14 9017 - 1265 17658 2644 86684 - 384
15 6934 63221 1114 14218 2102 86700 - 368
16 7426 69771 1265 16323 2589 86783 - 461
17 6460 54037 956 12312 1832 86669 - 312
18 8440 - 1152 15794 2497 86671 - 353
19 3625 - 826 10368 1617 86668 - 296
20 5878 55032 827 11815 1594 86600 - 243
21 3561 - 560 7508 1308 86585 - 226
22 2835 31617 505 7059 1002 86568 - 195
  1. Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare