Skip to main content

Table 15 Peak of RAM usage in Megabytes of the tools on datasets of NA12878

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chrom. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
    cov. 15x cov. 20x     
1 6361 - 2983 13259 3351 - - 3050
2 7082 - 3173 13938 3362 - - 3056
3 6180 - 2669 12672 3329 - - 3041
4 7531 - 2685 12959 3334 - - 3046
5 5882 - 2551 12364 3320 - - 3033
6 5649 - 2325 12120 3312 - - 3031
7 4597 - 2080 11167 3309 - - 3022
8 5075 - 2091 11164 3302 - - 3023
9 3583 - 1639 9345 3285 17915 - 3009
10 4059 - 1819 10164 3303 9766 - 3017
11 3965 - 1814 10135 3290 9632 - 3018
12 4011 - 1787 10229 3288 13984 - 3016
13 7950 - 1449 8982 3267 8371 - 3006
14 2857 - 1281 8198 3261 10024 - 2998
15 2232 8437 1077 7370 3257 8302 - 2993
16 3116 19698 1128 7703 3263 10328 - 2995
17 7844 7845 962 6737 3253 5941 - 2990
18 3542 - 1152 7810 3254 15868 - 2995
19 1721 - 793 6055 3244 8808 - 2983
20 8496 9966 865 6612 3242 7973 - 2985
21 1329 - 611 5211 3229 7852 - 2977
22 3324 7782 542 4912 3225 7904 - 2975
  1. Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare