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Table 16 List of SNV positions when the adaptive procedure of subsection Adaptive k-cMEC was activated for real Ashkenazim and simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chr.1

4 to 7

5 to 8

Data

Avg. Cov.

  

Ashkenazim

Cov. 25

  
 

Cov. 30

  
 

Cov. 35

35556

 
 

Cov. 40

  
 

Cov. 45

35581

 
 

Cov. 50

35593, 42897

 
 

Cov. 55

3528

 
 

Cov. 60

46338, 46339

 

Simulated

Cov. 25

35569, 38788

26778

 

Cov. 30

35594, 38815, 38817

26800

 

Cov. 35

38827

26811

 

Cov. 40

38837

38834, 38835, 38836

 

Cov. 45

38844

38842

 

Cov. 50

 

38849

 

Cov. 55

  
 

Cov. 60

  
  1. For each dataset, its row is identified by its average coverage (Avg. Cov.). The positions in column ‘4 to 7’ are those for which the number of corrections was increased from 4 to 7, and similarly for the column ‘5 to 8’
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BMC Bioinformatics

ISSN: 1471-2105

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