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Table 16 List of SNV positions when the adaptive procedure of subsection Adaptive k-cMEC was activated for real Ashkenazim and simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chr.1 4 to 7 5 to 8
Data Avg. Cov.   
Ashkenazim Cov. 25   
  Cov. 30   
  Cov. 35 35556  
  Cov. 40   
  Cov. 45 35581  
  Cov. 50 35593, 42897  
  Cov. 55 3528  
  Cov. 60 46338, 46339  
Simulated Cov. 25 35569, 38788 26778
  Cov. 30 35594, 38815, 38817 26800
  Cov. 35 38827 26811
  Cov. 40 38837 38834, 38835, 38836
  Cov. 45 38844 38842
  Cov. 50   38849
  Cov. 55   
  Cov. 60   
  1. For each dataset, its row is identified by its average coverage (Avg. Cov.). The positions in column ‘4 to 7’ are those for which the number of corrections was increased from 4 to 7, and similarly for the column ‘5 to 8’
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BMC Bioinformatics

ISSN: 1471-2105

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