Fig. 7

Mean relative abundance of transcripts missed by ALDEx2. This figure shows the mean relative abundance for differentially expressed transcripts (y-axis) versus the differential expression method (x-axis) (organized by the alignment and quantification procedure used). Mean relative abundances are provided for all transcripts selected by either (a) any ALDEx2 method (regardless of log-ratio transformation used) or (b) edgeR method only (and not any ALDEx2 method). The acronyms slFMD, slQUASI, and stsl describe alignment and quantification procedures (see Methods). Differentially expressed transcripts selected based on an FDR < 0.05 as calculated by the respective method. Figure prepared from Rollins et al. data