Fig. 10
From: trumpet: transcriptome-guided quality assessment of m6A-seq data
Reasonable ranges of metrics. The 3 major metrics, i.e., the percentage of enrichment region, scale factor and percentage of signal read counts, are calculated on data from recent high impact studies, representing data of reasonable good quality (IP/Input) and from data of poor quality generated by sample swop. Specifically, the Input samples are replaced with IP samples from other condition in IP/IP group, the IP samples are replaced by Input samples from other condition in Input/IP group, and the Input and IP samples are swopped in Input/Input group. The datasets of reasonable quality shows quite different pattern compared with other groups. The reasonable ranges of the enriched region, scale factor and signal reads count are 12%~ 25%, 0.08~ 0.3 and 87%~ 95%, respectively