Table 3 Time cost of each method with different dataset. The time is given in seconds(s)
From: Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture
mini-drosoph | HS_100 | HS_200 | HS_400 | ||
|---|---|---|---|---|---|
MIC-MEME | without “revcomp” | 140 s | 185 s | 642 s | 2608 |
with “revcomp” | 731 s | 444 s | 1788s | 7744 s | |
CUDA-MEME | without “revcomp” | 760 s | 437 s | 1535s | 5428 s |
with “revcomp” | 1298s | 688 s | 2362 s | 8225 s | |
BoBro2.0 | segment fault error | 143,246 s | 463,802 s | memory corruption error | |
EXTREME | 1453s | 4440 s | 11,189 s | 21,592 s | |