Table 3 i-spanin families
From: Phage spanins: diversity, topological dynamics and gene convergence
Family representative (No. of members) | Members |
|---|---|
Embedded | |
 Lambda (83) | Lambda, H-19B, M6, MP1412, PEp14, YuA, Pollock, FSL_SP-058, FSL_SP-076, 1720a-02, Bcep22, BcepMigl, DC1, Gifsy-2, BcepIL02, ES2, Gifsy-1, Fels-1, ST64b, ES18, FSL_SP-016, HK620, SPN3UB, cdtI, mEp460, spn9CC, vB_SosS_Oslo, BP-4795, HK106, HK633, SE1, ST104, VT2-Sakai, YYZ-2008, mEp235, phiSG1, 933 W, ENT39118, Min27, Stx1, Stx2–86, Stx2-II, Stx2-I, Stx2_converting_phage_vB_EcoP_24B, TL-2011c, 21, DE3, Eta, HK629, HK630, pSG3, ST160, ST64T, phi80, SfI, PhiES15, 2851, CUS-3, HK542, HK544, HK75, HK97, Hk022, Sf101, Stx2, c341, epsilon34, mEP234, mEPX1, mEp043_c-1, mEp213, sf6, vB_SemP_Emek, P22, Phi20, Phi75, HK140, HK446, P13374, POCJ13, PS34, mEpX2, phiEt88 |
 T7 (39) | T7, vB_EamP-L1, K11, K30, KP32, gh-1, phiPSA2, Berlin, Yep-phi, Yepe2, YpP-G, phi15, 13a, MmP1, PPpW-4, R, T3, T7M, Y, YpP-R, YpP-Y, YpsP-G, phiA1122, phiIBB-PF7A, phiSG-JL2, phiYeO3–12, vB_YenP_AP5, 285P, BA14, CR8, FE44, IME15, Vi06, K1F, PE3–1, EcoDS1, Phi-S1, Kvp1, CR44b |
 Bcep176 (15) | Bcep176, PPpW-3, RSK1, phiPSA1, BcepC6B, KS9, eiAU-183, E1, SPC32H, SPC32N, SPN1S, SPN9TCW, TL-2011b, epsilon15, phiV10 |
 N4 (12) | N4, vB_EamP-S6, RG-2014, Bp4, EC1-UPM, JWDelta, ECBP1, pSb-1, vB_EcoP_G7C, JWAlpha, vB_EcoP_PhAPEC5, vB_EcoP_PhAPEC7 |
 Groups of 4 | (B3, JBD25, JBD18, JBD67), (KS5, Smp131, phiRSA1, RSY1) |
 Groups of 3 | (phiE125, phi1026b, phi644–2), (HK225, ZF40, mEp237), (LIT1, vB_PaeP_C2–10_Ab09, Luz7) |
 Groups of 2 | (BcepMu, phiE255), (F10, vB_PaeP_Tr60_Ab31) |
 Singletons | phiW-14, Cr30, Xfas53, ECML-117, PY54, N15, BcepB1A, EcP1, S1, F116, phiPLPE, vB_EcoM_ECO1230–10 |
Overlapped | |
 Jerseya (27) | Jersey, L13, SETP3, SS3e, wksl3, K1G, K1H, K1ind3, SETP7, vB_SenS-Ent1, vB_SenS-Ent2, vB_SenS-Ent3, vB_SenS_AG11, SE2, SETP13, FSL_SP-101, K1ind1, K1ind2, EK99P-1, EP23, HK578, JL1, SSL-2009a, SO-1, FSL_SP-031_SIS, FSL_SP-038_SIS, FSL_SP-049_SIS |
 DMS3 (16) | DMS3, D3112, F_HA0480sp-Pa1651, JBD24, JBD26, JBD30, JBD5, JBD88A, JD024, LPB1, MP22, MP29, MP38, MP42, MP48, PA1-KOR-2010 |
 JH2 (15) | JH2, ECBP2, KBNP1711, NJ01, EC6, FO1a, FSL_SP-010, FSL_SP-012, FSL_SP-107, Felix01, Moogle, Mushroom, PhiEco32, UAB_phi87, WV8 |
 T5a (10) | T5, EPS7, Stitch, SPC35, bV_EcoS_AKFV33, vB_EcoS_FFH1, DT57C, My1, phiR201_SIS, Shivani_SIS |
 phiKMV (10) | phiKMV, LKD16, Luz19, MPK6, MPK7, PT2, PT5, phikF77, vB_Pae-TbilisiM32, phi2 |
 KS14 (9) | KS14, ST79, ENT90, Fels-2, RE-2010, phi52237, phiE12–2, phiE202, KL3 |
 F1 (8) | F1, Bk, Fz, Pr, R/C, S708, Tb, Wb |
 Chi (6) | Chi, FSL_SP-030, FSL_SP-088, FSL_SP-124, iEPS5, Enc34 |
 Groups of 5 | (P2, Wphi, fiAA91-ss, L-413C, PsP3), (phiCbk, CCrKarma, CcrMagneto, CcrRogue, CcrSwift), (PR3, PR4, PR772, PRD1, PR5), (CP1, OP1, Xop411, Xp10, phiL7) |
 Groups of 4 | (Bcep1, Bcep43, Bcep781, BcepNY3), (CP8, NCTC12673, CP30A, CPX), (KL1, 73, vB_Pae-Kakheti25, vB_PaeS_SCH_Ab26) |
 Groups of 3 | (PAK_P1, vB_PaeM_C2–10_Ab1, JG004), (9NA, FSL_SP-062, FSL_SP-069), (phiEa104, PhiEa21–4, vB_EamM-M7), (Era103, phiEA100, phiEa1H), (K139, Kappa, VPUSM_8), (phiHSIC, Jenny_12G5, pYD38-B), (MSW-3, PEi2, vB_AsaM-56b) |
 Groups of 2 | (phiJL001, RDJL_Phi_1), (phiMHaA1, vB_MhM_1152AP), (phi92, phAPEC8), (SfIV, SfV), (Mu, D108), (P1, P7), (PAP2, 119X), (APSE-1, APSE-2), (pIS4-A, pYD38-A), (Aaphi23, S1249), (HP1, HP2), (HK639, mEP390), (Paz, Pradob), (phi1402, phi1422), (Bf7, LKA1b), (DFL12phi1, EE36P1_SOSb)a |
 Singletons | OP2,9 g, phiKZ, EL, phiCTX, vB_VpaS_MAR10, 201phi2–1, KPP23, PhiO18P, vB_CsaP_GAP52, KS10, Kpp25, PBC5, Ea35–70, OBP, PAK_P5, PhiPsa374, ENT47670, Xp15, vB_XveM_DIBBI, 7–11, CCrColossus, phiAS7, BcepGomr, phiR8–01, BcepNazgul, Presley, SuMu, phi80–18, vB_CskP_GAP227, RSB3, vB_RleM_PPF1, ESSI-2, Cd1, RSJ2, PY100, RSB1, PM1, AF, vB_EamM-Y2, vB_RleS_L338C, Redjac, phiEcoM-GJ1, vB_RglS_P106B, SSU5, UAB_phi78, phi1M2–2, Salvo |
Separated | |
 T4 (40) | T4, Bp7, CC31, JS10, JS98, PG7, ime08, phiR1-RT, vB_YenM_TG1, AR1, ECML-134, PS2, PST, RB14, RB32, RB51, SP18, Shfl2, T4T, e11–2, ime09, pSs-1, phiD1, vB_EcoM-VR20, vB_EcoM-VR7, vB_EcoM_ACG-C40, vB_EcoM_VR25, vB_EcoM_VR26, wV7, RB69, Shf125875, hx01, vB_EcoM_JS09, S16, STML-198, Moon, JSE, Phi1, RB49, vB_EcoM_PhAPEC2 |
 KP27 (7) | KP27, Miller, RB43, KP15, Lw1, RB16, vB_CsaM_GAP161 |
 VP4 (7) | VP4, ICP3_2007_Ab, ICP3_2008_Ab, ICP3_2009_Bb, ICP3b, N4_(Vibrio) b, VP3b |
 phiAS4 (6) | phiAS4, 25, 31, 44RR2.8 t, Aes012, Aes508 |
 Groups of 4 | (KVP40, nt-1, phi-pp2, VH7D), (4MG, Av-05, PVP-SE1, vB_CsaM_GAP31), (D3, PAJU2, phi297, vB_PaeS_PMG1) |
 Groups of 3 | (Aeh1, PX29, phiAS5), (CP21, CP220, CPt10), (rv5, 2_JES-2013, vB_EcoM-FV3), (CR3, CR9, phiTE), (K1–5, K1Eb, SP6b) |
 Groups of 2 | (CC2, 65), (PBECO_4, 121Q) |
 Singletons | Marshall, B40–8, Pf-WMP3, CR5, phiR1–37, pVp-1, Ac42, vB_CsaM_GAP32, PhiKO2, phi_3, 133, vB_RleM_P10VF, JD001, BcepF1, 1 M3–16, Acj9, AH2, phage_7–7-1, PhiP27, F108, Sano |