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Fig. 2 | BMC Bioinformatics

Fig. 2

From: GPrank: an R package for detecting dynamic elements from genome-wide time series

Fig. 2

An illustrative example of the fitted GP models for three transcripts originated from RHOQ gene. GP models and the observations for each transcript are differentiated by different shades of gray. Relative frequencies of the transcripts are given on the y-axis and the transformed time points are given on the x-axis. Error bars denote 2 standard deviations which were obtained from pre-processing and the shaded areas denote 2 standard deviations confidence region for the fitted GP models. Higher log-BF indicates more evidence for a time-dependent model. The time series RNA-seq data have been provided in [33] and also analysed in [18] where log(5+t) transformation was applied to the time points t=[0,5,10,20,40,80,160,320,640,1280] prior to GP modelling

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