Fig. 6

Evaluation of P. xanthii set of assemblies. PCA plot of the first two dimensions with the five significant clusters found by HCPC analysis is shown. Cluster 6.1 (light blue dots): fungus references, two (MIRA4-primary and reconciled) Roche/454 assemblies and all the Illumina assemblies combined with Roche/454 reads using MIRA4. Cluster 6.2 (dark blue dots): all assembly-assembly combinations using Minimus2. Cluster 6.3 (green dots): all Illumina assemblies merged with Roche/454 reads using RAY and the Roche/454 EULER-primary assembly. Cluster 6.4 (red dots): reads-reads, RAY-combined assemblies and all the Illumina assemblies, excepting the OASES-primary assemblies. Cluster 6.5 (black dots): all assembly-assembly combinations performed with RAY and OASES-primary assemblies