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Table 5 Top significant assembly evaluation parameters of the first two PCA dimensions for each case study. The R coefficient measures the variable correlation with each PCA dimension

From: TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms

  PCA Dimension 1   PCA Dimension 2  
Case study Name R Coef Name R Coef
Plant references Contigs 0.955 Non-significant  
  Contigs500 0.953   
  AllTransSize 0.947   
  FragOrtho 0.887   
Case study 1 N50 0.957 Contigs 0.907
(Vitis vinifera) MeanContigLen 0.943 AllTransSize 0.650
  MeanContigCov 0.940 Contigs500 0.545
Case study 2 ComplOrth 0.959 N90 0.923
(Olea europaea) Contigs500 0.940 MeanContigLen 0.869
  DiffComplProts 0.940 MeanContigCov 0.811
Case study 3 Contigs500 0.981 N90 0.949
(Castanea sativa) ComplOrth 0.955 MeanContigLen 0.917
  DiffProts 0.937 N50 0.809
All Podosphaera DiffComplProts 0.966 Contigs 0.912
xanthii transcriptomes Contigs500 0.959 AllTransSize 0.801
  N50 0.936 Ns 0.780
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