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Table 2 Comparison between PHACCS + GAAS/BLAST and ENVirT estimates of viral richness and average genome length on viral metagenomes derived from different environments

From: ENVirT: inference of ecological characteristics of viruses from metagenomic data

Source Sample name ENVirT PHACCS
   L M Evenness L § M Evenness
French Lakes Lake Bourget 62279 42999 0.84862 13089 33311 0.92228
[6] Lake Pavin 81110 792 0.82202 12274 2628 0.89747
Feitsui V1 24112 587 0.84216 44297 3059 0.72402
Reservoir V2 16613 1288 0.88611 43926 513 0.93042
[17] V3 31019 617 0.93707 95269 174 0.94079
  V4 16535 1092 0.89225 62395 399 0.91161
  V5 15177 1121 0.89919 41377 419 0.93946
  V6 46677 1929 0.79735 125321 221 0.90320
Fermented Shrimp 27337 4931 0.92204 39839 4606 0.90349
food Kimchi 53837 1395 0.88842 48220 1415 0.89653
[32] Sauerkraut 277163 719 0.80599 36494 2692 0.86619
Perennial ponds Ilij 75242 1703 0.88137 71477 1687 0.88550
of the Molomhar 394921 223 0.87082 60959 1318 0.89228
Mauritanian Sahara Hamdoun 176346 515 0.66600 60479 217 0.88719
[5] El Berbera 81118 6199 0.69961 76501 5696 0.71009
Human X-1 175863 559 0.83496 50000 815 0.92174
gut H1-1 497223 609 0.62918 50000 397 0.92259
[28] H1-2 387877 212 0.73163 50000 353 0.92904
  H1-7 282786 151 0.78132 50000 315 0.92531
  H1-8 570706 121 0.68525 50000 239 0.94400
  1. M = estimated richness, L = estimated average genome length (bp). § = Average genome length used in the original publication. = An estimate based on GAAS software ([33]). = An estimate based on a BLAST search. = Assumed value