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Table 2 Comparison between PHACCS + GAAS/BLAST and ENVirT estimates of viral richness and average genome length on viral metagenomes derived from different environments

From: ENVirT: inference of ecological characteristics of viruses from metagenomic data

Source

Sample name

ENVirT

PHACCS

  

L

M

Evenness

L §

M

Evenness

French Lakes

Lake Bourget

62279

42999

0.84862

13089

33311

0.92228

[6]

Lake Pavin

81110

792

0.82202

12274

2628

0.89747

Feitsui

V1

24112

587

0.84216

44297

3059

0.72402

Reservoir

V2

16613

1288

0.88611

43926

513

0.93042

[17]

V3

31019

617

0.93707

95269

174

0.94079

 

V4

16535

1092

0.89225

62395

399

0.91161

 

V5

15177

1121

0.89919

41377

419

0.93946

 

V6

46677

1929

0.79735

125321

221

0.90320

Fermented

Shrimp

27337

4931

0.92204

39839

4606

0.90349

food

Kimchi

53837

1395

0.88842

48220

1415

0.89653

[32]

Sauerkraut

277163

719

0.80599

36494

2692

0.86619

Perennial ponds

Ilij

75242

1703

0.88137

71477

1687

0.88550

of the

Molomhar

394921

223

0.87082

60959

1318

0.89228

Mauritanian Sahara

Hamdoun

176346

515

0.66600

60479

217

0.88719

[5]

El Berbera

81118

6199

0.69961

76501

5696

0.71009

Human

X-1

175863

559

0.83496

50000

815

0.92174

gut

H1-1

497223

609

0.62918

50000

397

0.92259

[28]

H1-2

387877

212

0.73163

50000

353

0.92904

 

H1-7

282786

151

0.78132

50000

315

0.92531

 

H1-8

570706

121

0.68525

50000

239

0.94400

  1. M = estimated richness, L = estimated average genome length (bp). § = Average genome length used in the original publication. = An estimate based on GAAS software ([33]). = An estimate based on a BLAST search. = Assumed value