Fig. 1From: CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition designCiliateGEM pipeline. CiliateGEM was constructed using the protocol by Thiele and Palsson [13], as well as manual curation. To characterise the metabolic networks, we have gathered all core pathways from different organisms, including bacteria. CiliateGEM is provided in SBML and Matlab format as AdditionalĀ filesĀ 6 and 7Back to article page