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Table 3 Real datasets analysis where the inputs of EIM pipeline are the read set and reference genome

From: Assessing the impact of exact reads on reducing the error rate of read mapping

Assembly

Exact

EIM

Bowtie2

E. coli

   

Contigs-500

64

1

11

N50 (kbp)

1250.9

4639.673

597.8

Errors

0

2

2

Genome-Fraction (%)

99.995

100

100

Human chromosome 14

   

Contigs-500

27312

451

1179

N50 (kbp)

6

407.6

174.1

Errors

18

44407

44911

Genome-Fraction (%)

93.22

99.80

99.71

  1. The evaluation metrics has been defined in the text. The columns headed ’Exact’, ’EIM’ and ’Bowtie2’ represent the contiguity and quality of contigs constructed by ExactMapping step of EIM, EIM and Bowtie2, respectively
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BMC Bioinformatics

ISSN: 1471-2105

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