Table 8 Evaluating EIM on some eukaryotic datasets
From: Assessing the impact of exact reads on reducing the error rate of read mapping
Assembly | EIM (v2) | Bowtie2 |
|---|---|---|
Human chromosome 1 | Â | Â |
Contigs-500 | 2497 | 5018 |
N50 (kbp) | 420.7 | 158.2 |
Errors | 115381 | 120726 |
IUPAC-codes | 7862 | 158247 |
Genome-Fraction (%) | 99.828 | 99.614 |
Remapped-Reads (%) | 52.02 | 50.95 |
Human chromosome 10 | Â | Â |
Contigs-500 | 1443 | 2478 |
N50 (kbp) | 399.9 | 149.2 |
Errors | 70478 | 73842 |
IUPAC-codes | 5508 | 112333 |
Genome-Fraction (%) | 99.209 | 99.034 |
Remapped-Reads (%) | 51.72 | 49.93 |
Human chromosome 21 | Â | Â |
Contigs-500 | 1239 | 2362 |
N50 (kbp) | 237.8 | 101 |
Errors | 22904 | 23579 |
IUPAC-codes | 3232 | 46155 |
Genome-Fraction (%) | 99.114 | 97.73 |
Remapped-Reads (%) | 44.58 | 42.23 |
Arabidopsis Thaliana (bur-0) | Â | Â |
Contigs-500 | 6936 | 6987 |
N50 (kbp) | 428.8 | 417.4 |
Errors | 136539 | 179312 |
IUPAC-codes | 4842 | 2370 |
Genome-Fraction (%) | 98.634 | 98.572 |
Remapped-Reads (%) | 66.32 | 65.24 |