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Table 9 Comparing EIM and MMR results on a real dataset

From: Assessing the impact of exact reads on reducing the error rate of read mapping

Assembly

Bowtie2

EIM (v2)

MMR

Contigs-500

259

263

260

N50 (kbp)

29.3

32

31.3

Errors

2472

1190

1369

IUPAC-codes

280

56

224

Genome-Fraction (%)

88.575

88.578

88.671

  1. The evaluation metrics has been defined in the text. The columns headed ’Bowtie2’, ’EIM (v2)’ and ’MMR’ represent the contiguity and quality of contigs obtained based on the results of Bowtie2, EIM (v2) pipeline and MMR tool, respectively
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BMC Bioinformatics

ISSN: 1471-2105

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