Fig. 6
From: ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
ASGAL pipeline. The steps of the pipeline implemented by ASGAL are shown together with their input and output: the splicing graph is built from the reference genome (FASTA file) and the gene annotation (GTF file), the RNA-Seq sample (FASTA or FASTQ file) is aligned to the splicing graph, and finally the alignments to the splicing graph are used to compute the spliced alignments to the reference genome (SAM file) and to detect the AS events supported by the sample (CSV file)