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Table 3 Computational resources required by the two tested methods (ASGAL and STAR) to align the simulated datasets (5M and 10M)

From: ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events

Sample

Tool

Time (m)

Memory Peak (MB)

5M

ASGAL

475

249

 

STAR

179

7921

10M

ASGAL

945

247

 

STAR

197

7921

  1. These results are shown in terms of time (minutes) and memory peak (MegaBytes). These results take into account both the index and the alignment steps performed by the tools
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BMC Bioinformatics

ISSN: 1471-2105

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