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Fig. 2 | BMC Bioinformatics

Fig. 2

From: Deblender: a semi−/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples

Fig. 2

GSE19830 dataset with 33 mixed samples including 3 tissues (brain, liver, lung). Evaluation of methods relative to real mixture proportions based on known markers (partial: CIBERSORT, complete semi-supervised: Deblender, DSA, MMAD, NMF-CELLMIX) or without prior information (complete unsupervised: Deblender*, MMAD*). Deblender* results are reported with (A) default preprocessing – S1 (B) default preprocessing – S1&S2. mRMSE: arithmetic mean of the RMSE calculated for each tissue separately

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BMC Bioinformatics

ISSN: 1471-2105

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