Table 11 The performance of different docking methods on common 10-protein-peptide complexes, in term of their re-docking ability
From: Benchmarking of different molecular docking methods for protein-peptide docking
Docking Method | L-RMSD | |
|---|---|---|
Top pose | Best pose | |
AutoDock | 8.31 | 5.77 |
Autodock Vina | 8.37 | 4.57 |
Surflex-Dock | 8.02 | 4.96 |
GOLD (ASP)a | 8.52 | 4.65 |
GOLD (CP)a | 9.59 | 5.51 |
GOLD (CS)a | 9.86 | 4.99 |
GOLD (GS)a | 6.39 | 3.95 |
Hex | 12.27 | 9.55 |
ZDOCK | 4.87 | 2.14 |
PatchDock | 11.98 | 4.22 |
pepATTRACT | 13.07 | 7.66 |