Table 8 The performance of best docking poses having different number of rotatable bonds in term of I-RMSD; poses generated by different methods on the PPDbench dataset
From: Benchmarking of different molecular docking methods for protein-peptide docking
Docking methods | 0–40 | 41–60 | > 60 |
|---|---|---|---|
ATTRACT-20a | 5.99 | 6.73 | 4.42 |
ATTRACT-1 | 11.33 | 16.77 | 16.11 |
Hex-20 | 23.35 | 25.99 | 27.66 |
Hex-1 | 33.42 | 35.65 | 38.13 |
ZDOCK-20 | 4.74 | 8.09 | 8.85 |
ZDOCK-1 | 11.73 | 16.92 | 17.49 |
PatchDock-20 | 8.93 | 7.09 | 8.39 |
PatchDock-1 | 16.32 | 19.84 | 23.93 |
pepATTRACT-20 | 9.31 | 15.34 | 13.79 |
pepATTRACT-1 | 16.49 | 22.47 | 27.40 |
FRODOCK-20 | 2.73 | 4.22 | 3.29 |
FRODOCK-1 | 9.97 | 13.70 | 10.53 |