|
Training dataset 1
|
574
|
27,735
|
The most likely causal dsQTL SNPs were downloaded from deltaSVM [30]
|
|
Training dataset 2
|
1614
|
161,400
|
Regulatory associated mutations were downloaded from HGMD from 2012, and random SNVs with allele frequency ≥ 1% in the 1000 Genomes Project
|
|
Training dataset 3
|
31,118
|
36,540
|
eQTLs SNPs were collected from 11 studies on 7 tissues/cell lines
|
|
Training dataset 4
|
78,613
|
593,335
|
Non-coding eQTLs from GRASP was considered to be associated, while SNPs from 1000 Genomes Project not to be associated
|
|
Testing dataset 1
|
3439
|
66,916
|
Based on P-values of imputed SNPs from Psychiatric Genome Consortium (PGC) schizophrenia GWAS
|
|
Testing dataset 2
|
8002
|
19,322
|
Based on P-values of imputed SNPs from Psychiatric Genome Consortium (PGC) autism spectrum disorder (ASD)
|
|
Testing dataset 3
|
76
|
156
|
Manually curated regulatory SNPs with experimental validation.
|
|
Testing dataset 4
|
75
|
402
|
The synonymous variants compiled by [72]
|
