Table 2 Whole genome alignments of the A. thaliana draft and processed assemblies to the homozygous parent genomes
From: Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Col-0 alignments | Cvi-0 alignments | |||
|---|---|---|---|---|
Coverage (% Col-0 length) | Identity (%) | Coverage (% Cvi-0 length) | Identity (%) | |
FALCON Unzip | ||||
- Primary contigs | 97.9 | 98.7 | 97.9 | 98.6 |
- Haplotigs | 87.5 | 98.5 | 87.7 | 98.6 |
Purge Haplotigs | ||||
- Primary contigs | 96.9 | 98.8 | 96.6 | 98.6 |
- Haplotigs | 94.2 | 98.5 | 94.9 | 98.6 |
Redundans | ||||
- Reduced contigs | 95.5 | 98.8 | 94.6 | 98.5 |