A benchmark study of sequence alignment methods for protein clustering

BMC Bioinformatics

Table 2 Average SW and RS scores of Esprit and MUSCLE (default) in re-sampled benchmark datasets

Re-sampled benchmark dataset	Average SW score of Esprit	Average SW score of MUSCLE (default)	P-value of SW	Average RS score of Esprit	Average RS score of MUSCLE (default)	P-value of RS
RV11	0.014383	0.007808	0.008627	0.91387	0.933349	0.5101
RV12	0.108044	0.003982	< 2.2e-16	0.705558	0.707488	0.8436
RV20	0.193411	0.009224	< 2.2e-16	0.403657	0.365046	0.07816
RV30	0.125547	0.007049	< 2.2e-16	0.407991	0.357121	0.001885
RV40	0.072819	0.000606	< 2.2e-16	0.705149	0.708882	0.7688
RV50	0.086507	0.006049	< 2.2e-16	0.322656	0.331129	0.5612
RV911	0.01329	−0.00131	3.512e-12	0.839489	0.826965	0.1271
RV912	0.167038	0.02381	< 2.2e-16	0.487026	0.37473	4.733e-07

ISSN: 1471-2105