Skip to main content

Table 2 Spearman correlation coefficients (SCC) between the inferred bin methylation level from different methods and the RRBS data. Cell line: GM12878, bin size: 100 bp

From: MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

  chr1 chr2 chr11 chr12 chr21 chr22
MEDIPS 0.7419 0.7599 0.7621 0.7566 0.8556 0.8127
MeDEStrand (only positive strand) 0.7837 0.7814 0.7933 0.7913 0.8679 0.824
MeDEStrand (only negative strand) 0.7827 0.7836 0.7939 0.7959 0.8667 0.8271
MeDEStrand 0.7858 0.7853 0.7943 0.7945 0.8719 0.8277