Fig. 3
From: An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
Concordance and discordance rates of alignments on real paired-end reads from different aligners. Cumulative counts of concordant and discordant alignments from high to low mapping quality for real bisulfite sequencing reads. There is only one point for BSmap and the aligners based bowtie separately, since these aligners have no map quality score. Bismark-bowtie2L15 means bowtie2 alignment with seed length 15