Fig. 5

Gini and permutation importance values of 258 features in 14 categories (colored marks). Feature category labels as follows: “LLR”, log-likelihood ratio (the new data-space geometric features); “repliseq”, replication timing; “geneannot”, gene-model annotation-based; “epigenome”, epigenomic segmentation [67, 68]; “featdist”, SNP location-related; “chrom”, the chromosome; “eigen”, based on the Eigen [21] score; “phylogenetic”, phylogenetic interspecies local sequence conservation [6, 80, 81]; “allelism”, allele and MAF-related; “DHS”, DNase I hypersensitive site; “DNAContent”, local nucleotide frequences; “eQTL”, expression quantitative trait locus [75]; “repeats”, genomic repeat annotation; “TFBS”, transcription factor binding site (see “Extracting the nongeometric features” section and Ref. [22] for details)