Table 1 MAQC and SEQC project data used for Shambhala validation
From: Shambhala: a platform-agnostic data harmonizer for gene expression data
Project | GEO reference | Platform name | Platform GEO ID | Number of samples |
|---|---|---|---|---|
MAQC | GSE5350 | Agilent-012391 Whole Human Genome Oligo Microarray G4112A () | GPL1708 | 59 |
MAQC | GSE5350 | Affymetrix Human Genome U133 Plus 2.0 Array | GPL570 | 59 |
MAQC | GSE5350 | Illumina Sentrix Human-6 Expression Beadchip | GPL2507 | 59 |
SEQC | GSE47792 | Illumina HiSeq 2000 | GPL11154 | 1324 |
SEQC | GSE56457 | Illumina HumanHT-12 V4.0 expression beadchip | GPL10558 | 24 |
SEQC | GSE56457 | Affymetrix Human Gene 2.0 ST Array | GPL17930 | 16 |
SEQC | GSE56457 | Affymetrix GeneChip® PrimeView™ Human Gene Expression Array | GPL16043 | 16 |