Table 5 Known ovarian cancer-associated and cancer- associated lncRNAs for these representative modules in OV
From: CeModule: an integrative framework for discovering regulatory patterns from genomic data in cancer
Module | Cancer lncRNAs | Numa | q-value | OV lncRNAs | Numb | q-value |
|---|---|---|---|---|---|---|
2 | MALAT1,MIR155HG,NEAT1,PVT1 | 4/74 | 1.05e-02 | MALAT1, NEAT1, PVT1 | 3/74 | 4.65e-04 |
7 | DLEU2,DNM3OS,GAS5,HOTAIRM1,MALAT1, SNHG1,SNHG3,SNHG5,TP53TG1 | 9/86 | 2.30e-06 | DNM3OS, GAS5, MALAT1 | 3/86 | 6.55e-04 |
12 | MALAT1,RMRP,RP11-385 J1.2,XIST | 4/30 | 6.00e-04 | MALAT1, XIST | 2/30 | 2.34e-03 |
31 | GAS5,MALAT1,NEAT1,RP11-304 L19.5,SNHG3,SNHG5,TP53TG1,UCA1 | 8/75 | 6.59e-06 | GAS5,MALAT1,NEAT1, UCA1 | 4/75 | 3.95e-05 |
41 | DLEU2,GAS5,LINC00467,MALAT1,NEAT1, SNHG1,SNHG3 | 7/57 | 9.50e-06 | GAS5, MALAT1, NEAT1 | 3/57 | 3.91e-04 |
62 | DNM3OS,H19,HOTAIRM1,LINC00152,MALAT1,MEG3,NEAT1,PVT1,RMRP,RP11-304 L19.5,RP11-401P9.4,SNHG5,UCA1,XIST | 14/79 | 2.35e-12 | DNM3OS, MALAT1, PVT1, NEAT1, UCA1, XIST, H19 | 7/79 | 1.59e-10 |
66 | H19,MALAT1,MEG3,NEAT1,PVT1,SNHG1, SNHG3,UCA1,XIST | 9/58 | 2.02e-07 | H19, MALAT1, NEAT1, PVT1, UCA1, XIST | 6/58 | 1.78e-09 |