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Table 8 Comparison of execution time on D1 (unit: min)

From: ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark

Number of threads

6

12

24

48

96

192

GATK4 HaplotypeCallerSpark

306.32

170.32

105.91

76.41

59.56

–

SparkGA

286.18

145.35

85.94

51.29

36.76

28.73

ADS-HCSpark

209.93

109.96

58.45

34.70

24.97

20.71

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BMC Bioinformatics

ISSN: 1471-2105

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