Fig. 2
From: SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Workflows for formatting output files by SEQprocess. Output files generated by the pipelines are transformed into Bioconductor-compatible data types of ‘ExpressionSet’ or ‘SummarizedExperiment’. Different data types of RNA abundance, mutation, and DNA copy numbers are transformed into an ‘ExpressionSet’ with different names of eSet, vSet, and cSet, respectively. Each of ‘ExpressionSet’ data can be further transformed into another data type ‘SummarizedExperiment’