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Table 5 Comparison of DeepUbi and other ubiquitination prediction tools

From: DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins

Predictor No. of positive samples Acc (%) Sn (%) Sp (%) AUC MCC
UbiPred 151 84.44 83.44 85.43 0.85 0.69
UbPred 265 72.0 0.79
UbSite 385 74.5 65.5 74.8
CKSAAP_UbSite 263 73.4 69.85 76.96 0.81 0.47
UbiProber 22,192 37.0 90.0 0.77 0.63
hCKSAAP_UbSite 9537 0.77
iUbiq-Lys 659 82.14 80.56 99.39 0.50
ESA-UbiSite 85 94.0 96.0 92.0 0.92
DeepUbi 53,999 88.98 89.80 88.10 0.91 0.78