Table 5 Comparison of DeepUbi and other ubiquitination prediction tools
From: DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins
Predictor | No. of positive samples | Acc (%) | Sn (%) | Sp (%) | AUC | MCC |
|---|---|---|---|---|---|---|
UbiPred | 151 | 84.44 | 83.44 | 85.43 | 0.85 | 0.69 |
UbPred | 265 | 72.0 | – | – | 0.79 | – |
UbSite | 385 | 74.5 | 65.5 | 74.8 | – | – |
CKSAAP_UbSite | 263 | 73.4 | 69.85 | 76.96 | 0.81 | 0.47 |
UbiProber | 22,192 | – | 37.0 | 90.0 | 0.77 | 0.63 |
hCKSAAP_UbSite | 9537 | – | – | – | 0.77 | – |
iUbiq-Lys | 659 | 82.14 | 80.56 | 99.39 | – | 0.50 |
ESA-UbiSite | 85 | 94.0 | 96.0 | 92.0 | – | 0.92 |
DeepUbi | 53,999 | 88.98 | 89.80 | 88.10 | 0.91 | 0.78 |