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Table 4 Comprehensive comparison based on number of motifs per sequence and architecture in different cellular compartments

From: Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

Compartments cds Unique sequences Motifs Motifs/sequences Sequences/architectures
DNA 96 22 86 3.91 9.04
Exposed 97 17 92 5.41 6.70
Intracellular 2116 304 1273 4.19 6.94
Secreted 204 23 193 8.40 4.65
Transcription factor (TF) 208 35 127 3.63 7.15
Transmembrane (TM) 714 75 601 8.01 4.55
Cell wall 407 60 284 4.73 6.69