Table 4 Comprehensive comparison based on number of motifs per sequence and architecture in different cellular compartments
From: Greedy de novo motif discovery to construct motif repositories for bacterial proteomes
Compartments | cds | Unique sequences | Motifs | Motifs/sequences | Sequences/architectures |
|---|---|---|---|---|---|
DNA | 96 | 22 | 86 | 3.91 | 9.04 |
Exposed | 97 | 17 | 92 | 5.41 | 6.70 |
Intracellular | 2116 | 304 | 1273 | 4.19 | 6.94 |
Secreted | 204 | 23 | 193 | 8.40 | 4.65 |
Transcription factor (TF) | 208 | 35 | 127 | 3.63 | 7.15 |
Transmembrane (TM) | 714 | 75 | 601 | 8.01 | 4.55 |
Cell wall | 407 | 60 | 284 | 4.73 | 6.69 |