Table 4 Results obtained by GenHap on the PacBio RS II dataset with covā60Ć
From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly
GenHap | |||||
|---|---|---|---|---|---|
f SNPs | cov | #SNPs | Avg HE | Std dev HE | Avg running time [s] |
100 | ā¼60Ć | 500 | 1.22 | 0.36 | 0.17 |
1000 | 0.88 | 0.21 | 0.33 | ||
5000 | 0.56 | 0.10 | 1.81 | ||
10000 | 0.62 | 0.10 | 5.34 | ||
20000 | 0.60 | 0.07 | 17.14 | ||
200 | ā¼60Ć | 500 | 1.22 | 0.37 | 0.22 |
1000 | 0.79 | 0.27 | 0.36 | ||
5000 | 0.53 | 0.09 | 3.26 | ||
10000 | 0.45 | 0.08 | 8.01 | ||
20000 | 0.49 | 0.05 | 27.15 | ||