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Table 4 Results obtained by GenHap on the PacBio RS II dataset with cov60×

From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly

    GenHap
f SNPs cov #SNPs Avg HE Std dev HE Avg running time [s]
100 60× 500 1.22 0.36 0.17
   1000 0.88 0.21 0.33
   5000 0.56 0.10 1.81
   10000 0.62 0.10 5.34
   20000 0.60 0.07 17.14
200 60× 500 1.22 0.37 0.22
   1000 0.79 0.27 0.36
   5000 0.53 0.09 3.26
   10000 0.45 0.08 8.01
   20000 0.49 0.05 27.15
  1. The performances were evaluated both in terms of HE and running time