Table 2 results of genotype calling on the test set of fitTetra 2.0
fitTetra1 | fitTetra2NP | fitTetra2P | ClusterCall min.posterior = 0.9 | ClusterCall, min.posterior = 0.5 | |
|---|---|---|---|---|---|
Called | 63.4% | 66.0% | 69.0% | 41.3% | 77.0% |
Matching | 50.9% | 57.4% | 63.2% | 20.5% | 27.9% |
Not matching | 12.5% | 8.8% | 6.0% | 20.8% | 48.9% |
Matching rate | 80.3% | 86.7% | 91.3% | 49.6% | 36.3% |
Not called | 36.6% | 34.0% | 31.0% | 58.7% | 23.0% |
> 90% in single category | 13.7% | 10.2% | 12.3% | 5.5% | 1.9% |
> 25% NAs | 7.9% | 20.9% | 7.5% | – | – |
No model | 15.0% | 2.7% | 11.0% | 53.2% | 21.3% |