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Table 4 Testing results of RhoTermPredict and performances of the Rho-independent terminators tool ARNold in the positive and negative set of sequences of B. subtilis 168a

From: RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

Tool

TP

FN

FP

TN

Precision (%)

Recall (%)

Specificity (%)

Accuracy (%)

F1-score

RhoTermPredict

17

17

5

29

77.3

50.0

85.3

67.5

0.6

ARNold

4

30

1

33

80.0

11.8

97.0

54.4

0.2

  1. aTest experiments were repeated 10 times for 34 randomly selected sequences of negative sets of B. subtilis 168 (in order to have a positive and a negative set of the same size), and the means were taken
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BMC Bioinformatics

ISSN: 1471-2105

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