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Table 1 Run times

From: Predicting enhancers in mammalian genomes using supervised hidden Markov models

 

Real time [s]

CPU time [s]

Method

Training

Prediction

Total

Training

Prediction

Total

eHMM

2.961

43.636

46.597

15.337

155.820

171.157

REPTILE

1.461

89.456

90.917

5.162

140.388

145.550

EpiCSeg

  

36.327

  

352.294

ChromHMM

  

50.401

  

282.909

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BMC Bioinformatics

ISSN: 1471-2105

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